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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44496.1Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component. (415 aa)    
Predicted Functional Partners:
EDM44495.1
ABC transporter related protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
  0.987
EDM44497.1
Hypothetical protein.
 
     0.951
EDM44494.1
Putative regulatory protein (nitrile hydratase activator like); COG0523 Putative GTPases (G3E family).
 
     0.796
EDM45669.1
ABC transporter, ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
  0.778
macB
ATPase; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
  0.778
EDM44140.1
Putative ABC transporter ATP-binding component; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
  0.778
lolD
Putative ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
  0.778
EDM42935.1
Gliding motility-related protein; possible outer membrane protein.
   
 
 0.771
EDM44493.1
Hypothetical protein; COG3211 Predicted phosphatase.
 
     0.628
folE-3
COG0302 GTP cyclohydrolase I.
       0.504
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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