STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44497.1Hypothetical protein. (145 aa)    
Predicted Functional Partners:
EDM44496.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.955
EDM44495.1
ABC transporter related protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
    0.948
EDM44494.1
Putative regulatory protein (nitrile hydratase activator like); COG0523 Putative GTPases (G3E family).
 
    0.816
EDM44493.1
Hypothetical protein; COG3211 Predicted phosphatase.
 
     0.614
folE-3
COG0302 GTP cyclohydrolase I.
       0.504
EDM44145.1
Hypothetical protein.
 
     0.501
EDM44498.1
COG4222 Uncharacterized protein conserved in bacteria.
       0.486
EDM44143.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
    0.440
EDM43980.1
Ferric uptake regulator, FUR family protein; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
 
     0.400
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.