EDM44522.1 protein (unidentified eubacterium SCB49)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EDM44522.1

Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (263 aa)

Predicted Functional Partners:

EDM44521.1

0.605

EDM45691.1

0.566

rpsD

0.465

EDM43986.1

0.454

EDM42871.1

0.454

EDM42876.1

0.454

EDM42879.1

0.454

EDM45597.1

0.452

EDM43743.1

0.452

EDM44523.1

0.437

Your Current Organism:

unidentified eubacterium SCB49

NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM42871.1	EDM42876.1	SCB49_11262	SCB49_11287	Hypothetical protein.	Putative orphan protein.	0.485
EDM42871.1	EDM42879.1	SCB49_11262	SCB49_11302	Hypothetical protein.	Hypothetical protein.	0.591
EDM42871.1	EDM44522.1	SCB49_11262	SCB49_13160	Hypothetical protein.	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	0.454
EDM42871.1	rpsD	SCB49_11262	SCB49_09625	Hypothetical protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.613
EDM42876.1	EDM42871.1	SCB49_11287	SCB49_11262	Putative orphan protein.	Hypothetical protein.	0.485
EDM42876.1	EDM44522.1	SCB49_11287	SCB49_13160	Putative orphan protein.	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	0.454
EDM42876.1	rpsD	SCB49_11287	SCB49_09625	Putative orphan protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.613
EDM42879.1	EDM42871.1	SCB49_11302	SCB49_11262	Hypothetical protein.	Hypothetical protein.	0.591
EDM42879.1	EDM44522.1	SCB49_11302	SCB49_13160	Hypothetical protein.	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	0.454
EDM42879.1	rpsD	SCB49_11302	SCB49_09625	Hypothetical protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.613
EDM43743.1	EDM44522.1	SCB49_09135	SCB49_13160	COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	0.452
EDM43743.1	EDM45597.1	SCB49_09135	SCB49_07307	COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	Putative isoprenoid biosynthesis related protein; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.841
EDM43743.1	EDM45691.1	SCB49_09135	SCB49_07777	COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	Undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.899
EDM43986.1	EDM44522.1	SCB49_10362	SCB49_13160	Hypothetical protein.	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	0.454
EDM43986.1	rpsD	SCB49_10362	SCB49_09625	Hypothetical protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.613
EDM44521.1	EDM44522.1	SCB49_13155	SCB49_13160	Hypothetical protein.	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	0.605
EDM44522.1	EDM42871.1	SCB49_13160	SCB49_11262	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	Hypothetical protein.	0.454
EDM44522.1	EDM42876.1	SCB49_13160	SCB49_11287	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	Putative orphan protein.	0.454
EDM44522.1	EDM42879.1	SCB49_13160	SCB49_11302	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	Hypothetical protein.	0.454
EDM44522.1	EDM43743.1	SCB49_13160	SCB49_09135	Putative 10 TMS drug/metabolite exporter, DME family, DMT superfamily protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.452