EDM44524.1 protein (unidentified eubacterium SCB49)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDM44524.1

Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily. (404 aa)

Predicted Functional Partners:

EDM44279.1

0.647

EDM45739.1

0.585

EDM45740.1

0.585

EDM44758.1

0.553

EDM43391.1

0.516

EDM45664.1

0.516

EDM44523.1

0.484

Your Current Organism:

unidentified eubacterium SCB49

NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM43391.1	EDM44524.1	SCB49_00040	SCB49_13170	COG0845 Membrane-fusion protein.	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	0.516
EDM44279.1	EDM44524.1	SCB49_04600	SCB49_13170	Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	0.647
EDM44279.1	EDM45739.1	SCB49_04600	SCB49_08017	Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	COG2021 Homoserine acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.	0.628
EDM44279.1	EDM45740.1	SCB49_04600	SCB49_08022	Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Bifunctional protein: aspartokinase I; COG0460 Homoserine dehydrogenase.	0.628
EDM44523.1	EDM44524.1	SCB49_13165	SCB49_13170	Hypothetical protein.	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	0.484
EDM44524.1	EDM43391.1	SCB49_13170	SCB49_00040	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	COG0845 Membrane-fusion protein.	0.516
EDM44524.1	EDM44279.1	SCB49_13170	SCB49_04600	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.647
EDM44524.1	EDM44523.1	SCB49_13170	SCB49_13165	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	Hypothetical protein.	0.484
EDM44524.1	EDM44758.1	SCB49_13170	SCB49_14340	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	Hypothetical protein.	0.553
EDM44524.1	EDM45664.1	SCB49_13170	SCB49_07642	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	Membrane fusion efflux protein, putative; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.516
EDM44524.1	EDM45739.1	SCB49_13170	SCB49_08017	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	COG2021 Homoserine acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.	0.585
EDM44524.1	EDM45740.1	SCB49_13170	SCB49_08022	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	Bifunctional protein: aspartokinase I; COG0460 Homoserine dehydrogenase.	0.585
EDM44758.1	EDM44524.1	SCB49_14340	SCB49_13170	Hypothetical protein.	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	0.553
EDM45664.1	EDM44524.1	SCB49_07642	SCB49_13170	Membrane fusion efflux protein, putative; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	0.516
EDM45739.1	EDM44279.1	SCB49_08017	SCB49_04600	COG2021 Homoserine acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.	Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.628
EDM45739.1	EDM44524.1	SCB49_08017	SCB49_13170	COG2021 Homoserine acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	0.585
EDM45739.1	EDM45740.1	SCB49_08017	SCB49_08022	COG2021 Homoserine acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.	Bifunctional protein: aspartokinase I; COG0460 Homoserine dehydrogenase.	0.999
EDM45740.1	EDM44279.1	SCB49_08022	SCB49_04600	Bifunctional protein: aspartokinase I; COG0460 Homoserine dehydrogenase.	Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.628
EDM45740.1	EDM44524.1	SCB49_08022	SCB49_13170	Bifunctional protein: aspartokinase I; COG0460 Homoserine dehydrogenase.	Bicyclomycin resistance protein; COG0477 Permeases of the major facilitator superfamily.	0.585
EDM45740.1	EDM45739.1	SCB49_08022	SCB49_08017	Bifunctional protein: aspartokinase I; COG0460 Homoserine dehydrogenase.	COG2021 Homoserine acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.	0.999