Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44570.1Hypothetical protein. (175 aa)    
Predicted Functional Partners:
EDM44071.1
Hypothetical protein.
  
     0.732
EDM44037.1
Hypothetical protein.
  
     0.716
EDM43524.1
Fructose-6-phosphate aldolase 2; COG1225 Peroxiredoxin.
  
     0.701
EDM44392.1
COG3047 Outer membrane protein W.
  
     0.688
EDM43724.1
Hypothetical protein.
  
     0.683
EDM44557.1
Hypothetical protein; COG2730 Endoglucanase.
 
     0.681
EDM45608.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.677
EDM44550.1
Hypothetical protein.
  
     0.675
EDM43553.1
Hypothetical protein.
  
     0.668
EDM45251.1
COG1272 Predicted membrane protein, hemolysin III homolog.
  
     0.648
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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