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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44579.1Putative DNA-binding protein; COG1396 Predicted transcriptional regulators. (139 aa)    
Predicted Functional Partners:
EDM43338.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
  
 0.722
EDM43949.1
Competence-damage inducible protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
    
 0.705
EDM43041.1
Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family).
  
     0.692
EDM44580.1
Hypothetical protein.
 
     0.691
EDM44637.1
COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.690
EDM44581.1
COG0861 Membrane protein TerC, possibly involved in tellurium resistance.
       0.582
EDM44582.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
       0.574
EDM44583.1
Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.574
EDM45247.1
Hypothetical protein.
  
     0.535
EDM44090.1
Hypothetical protein.
  
    0.530
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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