Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDM44579.1Putative DNA-binding protein; COG1396 Predicted transcriptional regulators. (139 aa)    
Predicted Functional Partners:
EDM43338.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
  
 0.760
EDM44267.1
COG0281 Malic enzyme.
     
  0.759
EDM44580.1
Hypothetical protein.
 
     0.693
EDM43041.1
Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family).
  
     0.692
EDM44581.1
COG0861 Membrane protein TerC, possibly involved in tellurium resistance.
       0.581
EDM45652.1
COG2104 Sulfur transfer protein involved in thiamine biosynthesis.
     
  0.578
EDM44582.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
       0.574
EDM44583.1
Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.574
EDM45645.1
COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
   
 
  0.543
EDM45247.1
Hypothetical protein.
  
     0.535
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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