STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44624.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (766 aa)    
Predicted Functional Partners:
EDM44623.1
Putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; COG0693 Putative intracellular protease/amidase.
 
     0.821
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
     
  0.563
EDM44047.1
OmpA/MotB; COG0209 Ribonucleotide reductase, alpha subunit.
  
  
  0.561
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
   
  0.533
EDM45683.1
Hypothetical protein.
   
  0.533
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
  0.533
EDM43311.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
  
  
  0.520
EDM43466.1
Hypothetical protein; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases.
     
  0.518
EDM43052.1
Hypothetical protein.
     
  0.518
EDM44625.1
Hypothetical protein.
       0.517
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.