Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44639.1COG3503 Predicted membrane protein. (374 aa)    
Predicted Functional Partners:
EDM44640.1
Hypothetical protein.
       0.773
EDM45632.1
Hypothetical protein.
  
     0.685
EDM44641.1
COG1032 Fe-S oxidoreductase.
  
    0.566
EDM43970.1
Hypothetical protein; COG1266 Predicted metal-dependent membrane protease.
  
    0.526
EDM42898.1
Hypothetical protein.
  
    0.526
EDM43535.1
Hypothetical protein.
  
     0.490
EDM44247.1
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
     0.487
EDM44637.1
COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
       0.470
EDM44638.1
Hypothetical protein; COG1396 Predicted transcriptional regulators.
       0.470
EDM44114.1
Hypothetical protein.
  
     0.436
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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