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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44641.1COG1032 Fe-S oxidoreductase. (627 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen-III decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.668
EDM44865.1
Hypothetical protein.
   
    0.659
EDM42919.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
  
  0.587
EDM44639.1
COG3503 Predicted membrane protein.
  
    0.569
EDM44640.1
Hypothetical protein.
       0.564
EDM43712.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
   
  
 0.541
EDM43453.1
4-hydroxybenzoate-octaprenyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
   
 
 0.540
EDM45114.1
4-hydroxybenzoate-octaprenyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
   
 
 0.540
EDM45004.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
   
 
 0.529
EDM45226.1
Methyltransferase type 12; COG0500 SAM-dependent methyltransferases.
   
 
 0.529
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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