STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44641.1COG1032 Fe-S oxidoreductase. (627 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen-III decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.765
EDM43969.1
Chloromuconate cycloisomerase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
     
  0.580
EDM44639.1
COG3503 Predicted membrane protein.
  
    0.566
EDM44640.1
Hypothetical protein.
       0.564
EDM43712.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
   
    0.547
EDM43176.1
COG1398 Fatty-acid desaturase.
  
     0.519
EDM44865.1
Hypothetical protein.
   
    0.504
EDM45004.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
   
 
 0.455
EDM45226.1
Methyltransferase type 12; COG0500 SAM-dependent methyltransferases.
   
 
 0.455
EDM45343.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
   
 
 0.455
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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