STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44659.1WD40-like repeat/amidohydrolase domain protein; COG0823 Periplasmic component of the Tol biopolymer transport system. (1089 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.885
EDM43097.1
Hypothetical protein.
  
 
 0.791
EDM44661.1
ABC transporter ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
  
    0.778
EDM44660.1
Hypothetical protein.
       0.773
EDM44112.1
COG2986 Histidine ammonia-lyase.
  
  
 0.765
EDM44662.1
COG1652 Uncharacterized protein containing LysM domain.
       0.565
EDM44978.1
Formiminoglutamase-related protein; COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
  
 
 0.493
EDM43631.1
COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
  
 
 0.493
EDM44018.1
Formiminoglutamate hydrolase; COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
  
 
 0.493
EDM43786.1
Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.443
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.