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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44661.1ABC transporter ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component. (220 aa)    
Predicted Functional Partners:
EDM43912.1
Hypothetical protein; COG0795 Predicted permeases.
   
 0.897
EDM42934.1
Hypothetical protein; COG0795 Predicted permeases.
   
 0.897
EDM44659.1
WD40-like repeat/amidohydrolase domain protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
  
    0.777
EDM44660.1
Hypothetical protein.
       0.776
EDM45056.1
Hypothetical protein; COG0726 Predicted xylanase/chitin deacetylase.
    
  0.586
EDM44662.1
COG1652 Uncharacterized protein containing LysM domain.
       0.565
lolD
Putative ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
     0.555
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.551
EDM43079.1
Hypothetical protein; COG1452 Organic solvent tolerance protein OstA.
  
 
 0.550
EDM44779.1
Hypothetical protein.
  
 
 0.550
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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