STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44675.1Hypothetical protein. (239 aa)    
Predicted Functional Partners:
EDM44674.1
Hypothetical protein.
 
     0.940
EDM44673.1
COG0457 FOG: TPR repeat.
 
    0.904
EDM44672.1
COG5343 Uncharacterized protein conserved in bacteria.
  
     0.711
EDM43626.1
Hypothetical protein.
  
 
  0.664
EDM43174.1
Hypothetical protein.
  
     0.607
EDM44652.1
Probable extracellular nuclease; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
  
  0.556
EDM44676.1
Hypothetical protein.
       0.538
era
GTP-binding protein Era; COG0642 Signal transduction histidine kinase.
  
     0.519
EDM43109.1
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
 
  0.503
EDM43535.1
Hypothetical protein.
  
 
   0.501
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.