Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44680.1Hypothetical protein. (100 aa)    
Predicted Functional Partners:
EDM44678.1
Hypothetical protein.
 
    
0.821
EDM44677.1
COG3279 Response regulator of the LytR/AlgR family.
 
  0.818
EDM44679.1
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
 
    
0.809
EDM44681.1
Hypothetical protein; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
    
0.495
EDM44682.1
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.475
EDM45673.1
Hypothetical protein.
  
     0.464
EDM43116.1
Hypothetical protein.
  
     0.457
EDM44851.1
Hypothetical protein.
  
     0.437
EDM45581.1
COG2849 Uncharacterized protein conserved in bacteria.
  
     0.428
EDM43304.1
Hypothetical protein; COG1812 Archaeal S-adenosylmethionine synthetase.
  
     0.423
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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