STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44684.1COG4206 Outer membrane cobalamin receptor protein. (725 aa)    
Predicted Functional Partners:
EDM44682.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.889
EDM43052.1
Hypothetical protein.
  
  
  0.652
EDM44507.1
Hypothetical secreted protein.
    
  0.642
EDM44392.1
COG3047 Outer membrane protein W.
     
  0.620
EDM42984.1
COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.611
EDM44779.1
Hypothetical protein.
  
  
  0.608
EDM43243.1
CHU large protein; uncharacterized.
  
 
  0.593
EDM43221.1
Outer membrane protein; COG2831 Hemolysin activation/secretion protein.
  
  
  0.587
EDM43962.1
Outer membrane protein.
  
  
  0.586
EDM42925.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
  
  0.586
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.