Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDM44734.1Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component. (298 aa)    
Predicted Functional Partners:
EDM44733.1
Putative outer membrane protein probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.952
EDM44735.1
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.893
EDM44736.1
Hypothetical protein.
 
  
  0.799
EDM43339.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.736
EDM42950.1
Hypothetical protein.
  
     0.611
EDM45175.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.544
EDM44907.1
Hypothetical protein.
  
     0.451
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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