Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44736.1Hypothetical protein. (670 aa)    
Predicted Functional Partners:
EDM44733.1
Putative outer membrane protein probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.837
EDM44735.1
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.808
EDM44734.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
 
  
  0.799
EDM45510.1
Hypothetical protein.
  
     0.720
EDM43466.1
Hypothetical protein; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases.
  
 
  0.707
EDM44907.1
Hypothetical protein.
  
     0.609
EDM43352.1
Beta-lactamase; COG0457 FOG: TPR repeat.
  
  0.527
EDM45509.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
  
  0.514
EDM42950.1
Hypothetical protein.
  
     0.512
EDM43539.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
  
  0.507
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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