STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44736.1Hypothetical protein. (670 aa)    
Predicted Functional Partners:
EDM44733.1
Putative outer membrane protein probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.837
EDM44735.1
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.815
EDM44734.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
 
  
  0.791
EDM45510.1
Hypothetical protein.
  
     0.720
EDM44907.1
Hypothetical protein.
  
     0.609
EDM43352.1
Beta-lactamase; COG0457 FOG: TPR repeat.
  
  0.606
EDM43347.1
Peptidase S41; COG0793 Periplasmic protease.
  
  0.513
EDM42950.1
Hypothetical protein.
  
     0.512
EDM44530.1
COG5337 Spore coat assembly protein.
  
    0.500
EDM43466.1
Hypothetical protein; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases.
  
    0.496
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.