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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44748.1Regulator protein; COG1192 ATPases involved in chromosome partitioning. (254 aa)    
Predicted Functional Partners:
EDM44749.1
Chromosome partitioning protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
 
 0.996
EDM42936.1
Cell division protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; Belongs to the FtsK/SpoIIIE/SftA family.
  
  
 0.541
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.538
EDM44747.1
Hypothetical protein.
       0.482
EDM44751.1
COG0289 Dihydrodipicolinate reductase; Belongs to the DapB family.
  
    0.474
EDM44750.1
Hypothetical protein.
       0.461
EDM45240.1
Hypothetical protein.
  
 
 0.434
EDM43408.1
COG4206 Outer membrane cobalamin receptor protein.
    
   0.416
EDM45124.1
COG4206 Outer membrane cobalamin receptor protein.
    
   0.416
EDM45561.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
    
   0.416
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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