Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDM44754.1Endonuclease/exonuclease/phosphatase family protein; COG0708 Exonuclease III. (350 aa)    
Predicted Functional Partners:
EDM44755.1
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
       0.809
EDM44756.1
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
       0.672
mutL
DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
       0.672
EDM44758.1
Hypothetical protein.
       0.671
EDM45056.1
Hypothetical protein; COG0726 Predicted xylanase/chitin deacetylase.
  
    0.652
EDM45033.1
Hypothetical protein.
  
     0.579
EDM45298.1
Hypothetical protein.
  
     0.570
EDM44287.1
Hypothetical protein; COG4208 ABC-type sulfate transport system, permease component.
  
     0.569
EDM42935.1
Gliding motility-related protein; possible outer membrane protein.
  
     0.560
EDM43431.1
Aminotransferase; COG0520 Selenocysteine lyase.
    
   0.553
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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