Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44764.1Hypothetical protein. (98 aa)    
Predicted Functional Partners:
EDM44763.1
Hypothetical protein.
 
     0.833
EDM44761.1
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
 
     0.677
recF
DNA replication and repair protein RecF, ABC family ATPase; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
  
 0.658
EDM45706.1
COG2982 Uncharacterized protein involved in outer membrane biogenesis.
  
     0.599
EDM44265.1
Gliding motility-related protein.
  
     0.575
EDM45552.1
Hypothetical protein.
  
     0.523
EDM43538.1
Hypothetical protein.
  
     0.491
EDM43750.1
Gliding motility protein.
  
     0.475
EDM43338.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.473
EDM45475.1
Hypothetical protein.
  
     0.446
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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