Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44810.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (821 aa)    
Predicted Functional Partners:
EDM43529.1
Putative outer membrane protein, probably involved in nutrient binding.
  
  
  0.701
EDM43052.1
Hypothetical protein.
  
  
  0.695
ppnK
Inorganic polyphosphate/ATP-NAD kinase.
  
  
  0.684
EDM45398.1
Putative outer membrane protein, probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
     
  0.612
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
  0.610
EDM45683.1
Hypothetical protein.
  
  0.591
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
     
  0.563
EDM44039.1
Hypothetical protein; COG2317 Zn-dependent carboxypeptidase.
  
     0.543
EDM44809.1
COG1393 Arsenate reductase and related proteins, glutaredoxin family; Belongs to the ArsC family.
       0.536
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
   
  0.533
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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