STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42830.1Transcriptional regulator, putative; COG1396 Predicted transcriptional regulators. (68 aa)    
Predicted Functional Partners:
EDM42832.1
COG0732 Restriction endonuclease S subunits.
  
    0.787
EDM42831.1
COG0286 Type I restriction-modification system methyltransferase subunit.
       0.781
EDM42834.1
DEAD/DEAH box helicase; COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.
       0.775
EDM42833.1
Hypothetical protein.
       0.773
EDM44267.1
COG0281 Malic enzyme.
     
  0.759
EDM43338.1
Hypothetical protein; COG0457 FOG: TPR repeat.
    
 0.675
EDM45652.1
COG2104 Sulfur transfer protein involved in thiamine biosynthesis.
     
  0.578
EDM43241.1
Hypothetical protein.
  
     0.554
EDM45645.1
COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
   
 
  0.543
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
     
  0.504
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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