Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
carA | carB | LOKO_03432 | LOKO_03431 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.999 |
carA | glmS | LOKO_03432 | LOKO_02297 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.918 |
carA | glnA_1 | LOKO_03432 | LOKO_00022 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Glutamine synthetase. | 0.922 |
carA | gltB | LOKO_03432 | LOKO_02926 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Glutamate synthase [NADPH] large chain precursor. | 0.948 |
carA | gltD | LOKO_03432 | LOKO_02925 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Glutamate synthase [NADPH] small chain. | 0.905 |
carA | purF | LOKO_03432 | LOKO_01310 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.971 |
carB | carA | LOKO_03431 | LOKO_03432 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.999 |
carB | glmS | LOKO_03431 | LOKO_02297 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.943 |
carB | glnA_1 | LOKO_03431 | LOKO_00022 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Glutamine synthetase. | 0.911 |
carB | gltB | LOKO_03431 | LOKO_02926 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Glutamate synthase [NADPH] large chain precursor. | 0.976 |
carB | gltD | LOKO_03431 | LOKO_02925 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Glutamate synthase [NADPH] small chain. | 0.915 |
carB | purF | LOKO_03431 | LOKO_01310 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.984 |
gdhA | gdhB | LOKO_00003 | LOKO_02664 | NAD(P)-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | NAD-specific glutamate dehydrogenase. | 0.907 |
gdhA | glnA_1 | LOKO_00003 | LOKO_00022 | NAD(P)-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamine synthetase. | 0.906 |
gdhA | gltB | LOKO_00003 | LOKO_02926 | NAD(P)-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate synthase [NADPH] large chain precursor. | 0.994 |
gdhA | gltD | LOKO_00003 | LOKO_02925 | NAD(P)-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate synthase [NADPH] small chain. | 0.940 |
gdhA | nasD_1 | LOKO_00003 | LOKO_01767 | NAD(P)-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrite reductase [NAD(P)H]; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.906 |
gdhA | putA | LOKO_00003 | LOKO_03129 | NAD(P)-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.948 |
gdhB | gdhA | LOKO_02664 | LOKO_00003 | NAD-specific glutamate dehydrogenase. | NAD(P)-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.907 |
gdhB | glnA_1 | LOKO_02664 | LOKO_00022 | NAD-specific glutamate dehydrogenase. | Glutamine synthetase. | 0.933 |
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