STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMC99349.1Prophage CP4-57 regulatory protein (AlpA). (86 aa)    
Predicted Functional Partners:
AMC99350.1
Hypothetical protein.
       0.773
AMC99351.1
Hypothetical protein.
       0.773
AMC99353.1
Hypothetical protein.
  
  
 0.651
traC
DNA primase TraC.
       0.587
AMC99354.1
Hypothetical protein.
       0.566
AMC99355.1
Hypothetical protein.
       0.566
AMC99356.1
Hypothetical protein.
       0.566
AMC99348.1
Hypothetical protein.
       0.509
intA
Prophage CP4-57 integrase; Belongs to the 'phage' integrase family.
  
  
 0.417
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.