Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMC99460.1 | hemD | LOKO_00364 | LOKO_03491 | Cyclic nucleotide-gated potassium channel. | Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.446 |
AMC99460.1 | moaE | LOKO_00364 | LOKO_02045 | Cyclic nucleotide-gated potassium channel. | Molybdopterin synthase catalytic subunit. | 0.526 |
AMC99460.1 | rsmB | LOKO_00364 | LOKO_00213 | Cyclic nucleotide-gated potassium channel. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.423 |
AMC99460.1 | trkG | LOKO_00364 | LOKO_02521 | Cyclic nucleotide-gated potassium channel. | Trk system potassium uptake protein TrkG. | 0.518 |
AMC99460.1 | trkH | LOKO_00364 | LOKO_03617 | Cyclic nucleotide-gated potassium channel. | Trk system potassium uptake protein TrkH. | 0.518 |
hemD | AMC99460.1 | LOKO_03491 | LOKO_00364 | Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Cyclic nucleotide-gated potassium channel. | 0.446 |
moaE | AMC99460.1 | LOKO_02045 | LOKO_00364 | Molybdopterin synthase catalytic subunit. | Cyclic nucleotide-gated potassium channel. | 0.526 |
rsmB | AMC99460.1 | LOKO_00213 | LOKO_00364 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Cyclic nucleotide-gated potassium channel. | 0.423 |
rsmB | trkH | LOKO_00213 | LOKO_03617 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Trk system potassium uptake protein TrkH. | 0.558 |
trkG | AMC99460.1 | LOKO_02521 | LOKO_00364 | Trk system potassium uptake protein TrkG. | Cyclic nucleotide-gated potassium channel. | 0.518 |
trkH | AMC99460.1 | LOKO_03617 | LOKO_00364 | Trk system potassium uptake protein TrkH. | Cyclic nucleotide-gated potassium channel. | 0.518 |
trkH | rsmB | LOKO_03617 | LOKO_00213 | Trk system potassium uptake protein TrkH. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.558 |