Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMC99536.1 | ada | LOKO_00441 | LOKO_01513 | Hypothetical protein. | Bifunctional transcriptional activator/DNA repair enzyme Ada. | 0.532 |
AMC99536.1 | alkA | LOKO_00441 | LOKO_01530 | Hypothetical protein. | DNA-3-methyladenine glycosylase 2. | 0.537 |
AMC99536.1 | hcaR | LOKO_00441 | LOKO_00444 | Hypothetical protein. | Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. | 0.603 |
AMC99536.1 | nlpD_1 | LOKO_00441 | LOKO_00442 | Hypothetical protein. | Murein hydrolase activator NlpD precursor. | 0.778 |
AMC99536.1 | panE_1 | LOKO_00441 | LOKO_01357 | Hypothetical protein. | 2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. | 0.562 |
AMC99536.1 | panE_2 | LOKO_00441 | LOKO_03090 | Hypothetical protein. | 2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. | 0.562 |
AMC99536.1 | scoA | LOKO_00441 | LOKO_00445 | Hypothetical protein. | Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A. | 0.430 |
AMC99536.1 | yihG | LOKO_00441 | LOKO_00443 | Hypothetical protein. | Putative acyltransferase YihG. | 0.870 |
ada | AMC99536.1 | LOKO_01513 | LOKO_00441 | Bifunctional transcriptional activator/DNA repair enzyme Ada. | Hypothetical protein. | 0.532 |
ada | alkA | LOKO_01513 | LOKO_01530 | Bifunctional transcriptional activator/DNA repair enzyme Ada. | DNA-3-methyladenine glycosylase 2. | 0.979 |
alkA | AMC99536.1 | LOKO_01530 | LOKO_00441 | DNA-3-methyladenine glycosylase 2. | Hypothetical protein. | 0.537 |
alkA | ada | LOKO_01530 | LOKO_01513 | DNA-3-methyladenine glycosylase 2. | Bifunctional transcriptional activator/DNA repair enzyme Ada. | 0.979 |
hcaR | AMC99536.1 | LOKO_00444 | LOKO_00441 | Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. | Hypothetical protein. | 0.603 |
hcaR | nlpD_1 | LOKO_00444 | LOKO_00442 | Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. | Murein hydrolase activator NlpD precursor. | 0.617 |
hcaR | scoA | LOKO_00444 | LOKO_00445 | Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. | Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A. | 0.587 |
hcaR | yihG | LOKO_00444 | LOKO_00443 | Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. | Putative acyltransferase YihG. | 0.618 |
nlpD_1 | AMC99536.1 | LOKO_00442 | LOKO_00441 | Murein hydrolase activator NlpD precursor. | Hypothetical protein. | 0.778 |
nlpD_1 | hcaR | LOKO_00442 | LOKO_00444 | Murein hydrolase activator NlpD precursor. | Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. | 0.617 |
nlpD_1 | scoA | LOKO_00442 | LOKO_00445 | Murein hydrolase activator NlpD precursor. | Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A. | 0.447 |
nlpD_1 | yihG | LOKO_00442 | LOKO_00443 | Murein hydrolase activator NlpD precursor. | Putative acyltransferase YihG. | 0.871 |
page 1 of 2