STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yihGPutative acyltransferase YihG. (289 aa)    
Predicted Functional Partners:
nlpD_1
Murein hydrolase activator NlpD precursor.
  
    0.871
AMC99536.1
Hypothetical protein.
       0.870
plsB
Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family.
 
  
 0.697
hcaR
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
       0.618
scoA
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
       0.482
AMD02234.1
Hypothetical protein.
  
 
   0.447
AMD01871.1
Long-chain-fatty-acid--AMP ligase FadD29.
   
 
 0.432
fabH
3-oxoacyl-[acyl-carrier-protein] synthase 3.
 
  
 0.417
pyrD
Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
    0.415
scoB
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
       0.404
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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