Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMC99902.1 | gabD1_1 | LOKO_00821 | LOKO_00819 | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Succinate-semialdehyde dehydrogenase [NADP(+)] 1. | 0.613 |
AMC99902.1 | nemA | LOKO_00821 | LOKO_00820 | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | N-ethylmaleimide reductase. | 0.582 |
comR | nemA | LOKO_01229 | LOKO_00820 | HTH-type transcriptional repressor ComR. | N-ethylmaleimide reductase. | 0.602 |
gabD1_1 | AMC99902.1 | LOKO_00819 | LOKO_00821 | Succinate-semialdehyde dehydrogenase [NADP(+)] 1. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.613 |
gabD1_1 | nemA | LOKO_00819 | LOKO_00820 | Succinate-semialdehyde dehydrogenase [NADP(+)] 1. | N-ethylmaleimide reductase. | 0.753 |
nemA | AMC99902.1 | LOKO_00820 | LOKO_00821 | N-ethylmaleimide reductase. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.582 |
nemA | comR | LOKO_00820 | LOKO_01229 | N-ethylmaleimide reductase. | HTH-type transcriptional repressor ComR. | 0.602 |
nemA | gabD1_1 | LOKO_00820 | LOKO_00819 | N-ethylmaleimide reductase. | Succinate-semialdehyde dehydrogenase [NADP(+)] 1. | 0.753 |
nemA | tuf1 | LOKO_00820 | LOKO_00115 | N-ethylmaleimide reductase. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.406 |
tuf1 | nemA | LOKO_00115 | LOKO_00820 | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | N-ethylmaleimide reductase. | 0.406 |