STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMD00026.1Polysaccharide biosynthesis/export protein. (372 aa)    
Predicted Functional Partners:
etk
Tyrosine-protein kinase etk.
 
 
 0.997
wzb
Low molecular weight protein-tyrosine-phosphatase wzb.
 
  
 0.952
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.933
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
  
  
 0.789
galE
UDP-glucose 4-epimerase.
  
  
 0.655
scrY
Sucrose porin precursor.
  
  
 0.607
AMD01901.1
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.558
AMD00153.1
Putative glycosyl transferase.
  
  
 0.552
ylxH
Flagellum site-determining protein YlxH; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.515
AMD02712.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
 
 0.501
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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