Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMD00090.1 | AMD00091.1 | LOKO_01013 | LOKO_01014 | Hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Gram-negative bacterial tonB protein. | 0.717 |
AMD00090.1 | fhlA | LOKO_01013 | LOKO_01011 | Hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Formate hydrogenlyase transcriptional activator. | 0.668 |
AMD00090.1 | gshB | LOKO_01013 | LOKO_01015 | Hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | 0.862 |
AMD00090.1 | yqgF | LOKO_01013 | LOKO_01012 | Hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.964 |
AMD00091.1 | AMD00090.1 | LOKO_01014 | LOKO_01013 | Gram-negative bacterial tonB protein. | Hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.717 |
AMD00091.1 | fhlA | LOKO_01014 | LOKO_01011 | Gram-negative bacterial tonB protein. | Formate hydrogenlyase transcriptional activator. | 0.565 |
AMD00091.1 | gshB | LOKO_01014 | LOKO_01015 | Gram-negative bacterial tonB protein. | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | 0.829 |
AMD00091.1 | yqgF | LOKO_01014 | LOKO_01012 | Gram-negative bacterial tonB protein. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.722 |
alaS_1 | alaS_2 | LOKO_00688 | LOKO_02904 | Alanine--tRNA ligase. | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.975 |
alaS_1 | yqgF | LOKO_00688 | LOKO_01012 | Alanine--tRNA ligase. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.593 |
alaS_2 | alaS_1 | LOKO_02904 | LOKO_00688 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Alanine--tRNA ligase. | 0.975 |
alaS_2 | yqgF | LOKO_02904 | LOKO_01012 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.593 |
bvgS | fhlA | LOKO_00661 | LOKO_01011 | Virulence sensor protein BvgS precursor. | Formate hydrogenlyase transcriptional activator. | 0.574 |
bvgS | yqgF | LOKO_00661 | LOKO_01012 | Virulence sensor protein BvgS precursor. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.419 |
fhlA | AMD00090.1 | LOKO_01011 | LOKO_01013 | Formate hydrogenlyase transcriptional activator. | Hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.668 |
fhlA | AMD00091.1 | LOKO_01011 | LOKO_01014 | Formate hydrogenlyase transcriptional activator. | Gram-negative bacterial tonB protein. | 0.565 |
fhlA | bvgS | LOKO_01011 | LOKO_00661 | Formate hydrogenlyase transcriptional activator. | Virulence sensor protein BvgS precursor. | 0.574 |
fhlA | gshB | LOKO_01011 | LOKO_01015 | Formate hydrogenlyase transcriptional activator. | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | 0.468 |
fhlA | yqgF | LOKO_01011 | LOKO_01012 | Formate hydrogenlyase transcriptional activator. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.668 |
gshB | AMD00090.1 | LOKO_01015 | LOKO_01013 | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | Hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.862 |
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