STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMD00153.1Putative glycosyl transferase. (259 aa)    
Predicted Functional Partners:
rfaF_1
ADP-heptose--LPS heptosyltransferase 2.
 
  
 0.823
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.810
AMD00154.1
Phosphoglycerol transferase I.
  
  
 0.788
rfaF_2
ADP-heptose--LPS heptosyltransferase 2.
 
  
 0.768
mshA
D-inositol 3-phosphate glycosyltransferase.
 
 
 0.691
hldD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
 
 0.646
wecB
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.576
AMD00026.1
Polysaccharide biosynthesis/export protein.
  
  
 0.552
rfaQ
Lipopolysaccharide core heptosyltransferase RfaQ.
 
  
 0.538
etk
Tyrosine-protein kinase etk.
  
  
 0.528
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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