STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfB_2Long-chain-fatty-acid--CoA ligase. (540 aa)    
Predicted Functional Partners:
acrC_1
Acryloyl-CoA reductase (NADH).
 
 0.944
fadD_3
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.926
fadD_2
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.924
AMD00192.1
Thioesterase superfamily protein.
 
   
 0.908
AMD00191.1
Hypothetical protein.
 
     0.902
AMD00244.1
Alpha/beta hydrolase family protein.
    
 0.802
nqo1
NADH-quinone oxidoreductase chain 1.
    
 
 0.776
AMD01871.1
Long-chain-fatty-acid--AMP ligase FadD29.
 
 
0.775
paaH
3-hydroxyadipyl-CoA dehydrogenase.
  
  
 0.677
thcB
Cytochrome P450 116.
 
 0.676
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.