STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMD00402.1Hypothetical protein. (458 aa)    
Predicted Functional Partners:
cmpR_2
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
       0.782
AMD00021.1
Hypothetical protein.
  
     0.566
AMD02249.1
Hypothetical protein.
  
     0.533
AMD00398.1
Hypothetical protein.
  
     0.506
AMD02248.1
Hypothetical protein.
  
     0.470
yvdT
Putative HTH-type transcriptional regulator YvdT.
  
     0.464
AMC99960.1
Hypothetical protein.
  
     0.464
AMD00909.1
Phasin protein.
  
     0.439
AMD01472.1
Phasin protein.
  
     0.435
icaC
Putative poly-beta-1,6-N-acetyl-D-glucosamine export protein.
  
     0.409
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.