Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMD00595.1 | AMD00597.1 | LOKO_01527 | LOKO_01529 | Hypothetical protein. | TDP-fucosamine acetyltransferase. | 0.963 |
AMD00595.1 | AMD01871.1 | LOKO_01527 | LOKO_02820 | Hypothetical protein. | Long-chain-fatty-acid--AMP ligase FadD29. | 0.458 |
AMD00595.1 | alkA | LOKO_01527 | LOKO_01530 | Hypothetical protein. | DNA-3-methyladenine glycosylase 2. | 0.524 |
AMD00595.1 | kdkA_1 | LOKO_01527 | LOKO_01073 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.559 |
AMD00595.1 | ogt_2 | LOKO_01527 | LOKO_01531 | Hypothetical protein. | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.523 |
AMD00595.1 | paiB | LOKO_01527 | LOKO_01528 | Hypothetical protein. | Protease synthase and sporulation protein PAI 2. | 0.908 |
AMD00595.1 | pta_2 | LOKO_01527 | LOKO_00597 | Hypothetical protein. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.456 |
AMD00595.1 | rnc | LOKO_01527 | LOKO_02079 | Hypothetical protein. | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.561 |
AMD00597.1 | AMD00595.1 | LOKO_01529 | LOKO_01527 | TDP-fucosamine acetyltransferase. | Hypothetical protein. | 0.963 |
AMD00597.1 | alkA | LOKO_01529 | LOKO_01530 | TDP-fucosamine acetyltransferase. | DNA-3-methyladenine glycosylase 2. | 0.548 |
AMD00597.1 | ogt_2 | LOKO_01529 | LOKO_01531 | TDP-fucosamine acetyltransferase. | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.584 |
AMD00597.1 | paiB | LOKO_01529 | LOKO_01528 | TDP-fucosamine acetyltransferase. | Protease synthase and sporulation protein PAI 2. | 0.839 |
AMD01871.1 | AMD00595.1 | LOKO_02820 | LOKO_01527 | Long-chain-fatty-acid--AMP ligase FadD29. | Hypothetical protein. | 0.458 |
AMD01871.1 | kdkA_1 | LOKO_02820 | LOKO_01073 | Long-chain-fatty-acid--AMP ligase FadD29. | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.487 |
AMD01871.1 | pta_2 | LOKO_02820 | LOKO_00597 | Long-chain-fatty-acid--AMP ligase FadD29. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.679 |
AMD01871.1 | rnc | LOKO_02820 | LOKO_02079 | Long-chain-fatty-acid--AMP ligase FadD29. | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.687 |
alkA | AMD00595.1 | LOKO_01530 | LOKO_01527 | DNA-3-methyladenine glycosylase 2. | Hypothetical protein. | 0.524 |
alkA | AMD00597.1 | LOKO_01530 | LOKO_01529 | DNA-3-methyladenine glycosylase 2. | TDP-fucosamine acetyltransferase. | 0.548 |
alkA | ogt_2 | LOKO_01530 | LOKO_01531 | DNA-3-methyladenine glycosylase 2. | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.959 |
alkA | paiB | LOKO_01530 | LOKO_01528 | DNA-3-methyladenine glycosylase 2. | Protease synthase and sporulation protein PAI 2. | 0.512 |
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