STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
petEPlastocyanin precursor. (137 aa)    
Predicted Functional Partners:
nirT
Denitrification system component NirT.
 
     0.844
nirS_1
Nitrite reductase precursor.
 
 
 
 0.798
nirS_3
Nitrite reductase precursor.
 
 
 
 0.666
nirS_2
Nitrite reductase precursor.
 
 
   0.620
AMD00736.1
Hypothetical protein.
       0.589
AMD01893.1
Lactonase, 7-bladed beta-propeller.
   
 
 0.480
thcB
Cytochrome P450 116.
  
 
 0.472
AMD01808.1
Hypothetical protein.
   
   0.445
AMD00737.1
Periplasmic copper-binding protein.
       0.418
ccoP2_2
Cbb3-type cytochrome c oxidase subunit CcoP2.
 
   
 0.417
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.