STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yegE_3Putative diguanylate cyclase YegE. (656 aa)    
Predicted Functional Partners:
cph2_8
Phytochrome-like protein cph2.
 
 
0.945
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
 0.912
barA_3
Signal transduction histidine-protein kinase BarA.
 
 
 0.895
AMD01331.1
Blue-light-activated protein.
 
 
 0.893
cph2_11
Phytochrome-like protein cph2.
 
 
0.881
arcB
Aerobic respiration control sensor protein ArcB.
 
 0.850
bvgS
Virulence sensor protein BvgS precursor.
  
 
 0.847
gmr_5
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.824
cph2_2
Phytochrome-like protein cph2.
 
 0.809
yfgF_2
Cyclic di-GMP phosphodiesterase YfgF.
 
 
 0.787
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.