Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMC99567.1 | AMC99568.1 | LOKO_00472 | LOKO_00473 | Succinylglutamate desuccinylase / Aspartoacylase family protein. | Putative peptidase. | 0.994 |
AMC99567.1 | davD_2 | LOKO_00472 | LOKO_02338 | Succinylglutamate desuccinylase / Aspartoacylase family protein. | Glutarate-semialdehyde dehydrogenase DavD; Belongs to the aldehyde dehydrogenase family. | 0.511 |
AMC99567.1 | ectA | LOKO_00472 | LOKO_01900 | Succinylglutamate desuccinylase / Aspartoacylase family protein. | L-2,4-diaminobutyric acid acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A. | 0.900 |
AMC99567.1 | ectB | LOKO_00472 | LOKO_01901 | Succinylglutamate desuccinylase / Aspartoacylase family protein. | Diaminobutyrate--2-oxoglutarate transaminase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.903 |
AMC99567.1 | tpa | LOKO_00472 | LOKO_02337 | Succinylglutamate desuccinylase / Aspartoacylase family protein. | Taurine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.957 |
AMC99568.1 | AMC99567.1 | LOKO_00473 | LOKO_00472 | Putative peptidase. | Succinylglutamate desuccinylase / Aspartoacylase family protein. | 0.994 |
AMC99568.1 | AMC99655.1 | LOKO_00473 | LOKO_00567 | Putative peptidase. | Phytanoyl-CoA dioxygenase (PhyH). | 0.933 |
AMC99568.1 | AMD02133.1 | LOKO_00473 | LOKO_03086 | Putative peptidase. | Phytanoyl-CoA dioxygenase (PhyH). | 0.932 |
AMC99568.1 | davD_2 | LOKO_00473 | LOKO_02338 | Putative peptidase. | Glutarate-semialdehyde dehydrogenase DavD; Belongs to the aldehyde dehydrogenase family. | 0.530 |
AMC99568.1 | ectA | LOKO_00473 | LOKO_01900 | Putative peptidase. | L-2,4-diaminobutyric acid acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A. | 0.533 |
AMC99568.1 | ectB | LOKO_00473 | LOKO_01901 | Putative peptidase. | Diaminobutyrate--2-oxoglutarate transaminase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.534 |
AMC99568.1 | ectC | LOKO_00473 | LOKO_01902 | Putative peptidase. | L-ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant. | 0.940 |
AMC99568.1 | tpa | LOKO_00473 | LOKO_02337 | Putative peptidase. | Taurine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.738 |
AMC99655.1 | AMC99568.1 | LOKO_00567 | LOKO_00473 | Phytanoyl-CoA dioxygenase (PhyH). | Putative peptidase. | 0.933 |
AMC99655.1 | AMD02133.1 | LOKO_00567 | LOKO_03086 | Phytanoyl-CoA dioxygenase (PhyH). | Phytanoyl-CoA dioxygenase (PhyH). | 0.904 |
AMC99655.1 | ectA | LOKO_00567 | LOKO_01900 | Phytanoyl-CoA dioxygenase (PhyH). | L-2,4-diaminobutyric acid acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A. | 0.796 |
AMC99655.1 | ectB | LOKO_00567 | LOKO_01901 | Phytanoyl-CoA dioxygenase (PhyH). | Diaminobutyrate--2-oxoglutarate transaminase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.852 |
AMC99655.1 | ectC | LOKO_00567 | LOKO_01902 | Phytanoyl-CoA dioxygenase (PhyH). | L-ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant. | 0.979 |
AMD02133.1 | AMC99568.1 | LOKO_03086 | LOKO_00473 | Phytanoyl-CoA dioxygenase (PhyH). | Putative peptidase. | 0.932 |
AMD02133.1 | AMC99655.1 | LOKO_03086 | LOKO_00567 | Phytanoyl-CoA dioxygenase (PhyH). | Phytanoyl-CoA dioxygenase (PhyH). | 0.904 |
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