Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMD02164.1 | csdE | LOKO_03117 | LOKO_01956 | Hypothetical protein. | Sulfur acceptor protein CsdE. | 0.492 |
AMD02164.1 | sufB | LOKO_03117 | LOKO_03113 | Hypothetical protein. | FeS cluster assembly protein SufB. | 0.936 |
AMD02164.1 | sufC | LOKO_03117 | LOKO_03114 | Hypothetical protein. | Putative ATP-dependent transporter SufC. | 0.971 |
AMD02164.1 | sufD | LOKO_03117 | LOKO_03115 | Hypothetical protein. | FeS cluster assembly protein SufD. | 0.964 |
AMD02164.1 | sufS | LOKO_03117 | LOKO_03116 | Hypothetical protein. | Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.961 |
csdE | AMD02164.1 | LOKO_01956 | LOKO_03117 | Sulfur acceptor protein CsdE. | Hypothetical protein. | 0.492 |
csdE | sufB | LOKO_01956 | LOKO_03113 | Sulfur acceptor protein CsdE. | FeS cluster assembly protein SufB. | 0.872 |
csdE | sufC | LOKO_01956 | LOKO_03114 | Sulfur acceptor protein CsdE. | Putative ATP-dependent transporter SufC. | 0.828 |
csdE | sufD | LOKO_01956 | LOKO_03115 | Sulfur acceptor protein CsdE. | FeS cluster assembly protein SufD. | 0.848 |
csdE | sufS | LOKO_01956 | LOKO_03116 | Sulfur acceptor protein CsdE. | Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.994 |
csdE | thiI | LOKO_01956 | LOKO_01964 | Sulfur acceptor protein CsdE. | tRNA sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.469 |
csdE | xerD_1 | LOKO_01956 | LOKO_01957 | Sulfur acceptor protein CsdE. | Tyrosine recombinase XerD. | 0.730 |
sufB | AMD02164.1 | LOKO_03113 | LOKO_03117 | FeS cluster assembly protein SufB. | Hypothetical protein. | 0.936 |
sufB | csdE | LOKO_03113 | LOKO_01956 | FeS cluster assembly protein SufB. | Sulfur acceptor protein CsdE. | 0.872 |
sufB | sufC | LOKO_03113 | LOKO_03114 | FeS cluster assembly protein SufB. | Putative ATP-dependent transporter SufC. | 0.999 |
sufB | sufD | LOKO_03113 | LOKO_03115 | FeS cluster assembly protein SufB. | FeS cluster assembly protein SufD. | 0.996 |
sufB | sufS | LOKO_03113 | LOKO_03116 | FeS cluster assembly protein SufB. | Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.989 |
sufC | AMD02164.1 | LOKO_03114 | LOKO_03117 | Putative ATP-dependent transporter SufC. | Hypothetical protein. | 0.971 |
sufC | csdE | LOKO_03114 | LOKO_01956 | Putative ATP-dependent transporter SufC. | Sulfur acceptor protein CsdE. | 0.828 |
sufC | sufB | LOKO_03114 | LOKO_03113 | Putative ATP-dependent transporter SufC. | FeS cluster assembly protein SufB. | 0.999 |
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