STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMD01216.1PilZ domain protein. (111 aa)    
Predicted Functional Partners:
cph2_14
Phytochrome-like protein cph2.
   
   0.818
AMD01978.1
Pilus assembly protein, PilP.
  
   
 0.814
AMD01980.1
Fimbrial assembly protein (PilN).
  
   
 0.814
AMD01981.1
Competence protein A.
  
   
 0.805
AMD01979.1
Pilus assembly protein, PilO.
  
   
 0.791
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
    
   0.790
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
    
   0.790
cph2_7
Phytochrome-like protein cph2.
    
   0.790
yfgF_1
Cyclic di-GMP phosphodiesterase YfgF.
    
   0.790
cph2_9
Phytochrome-like protein cph2.
    
   0.790
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.