STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaO_62,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor. (336 aa)    
Predicted Functional Partners:
siaT_15
Sialic acid TRAP transporter permease protein SiaT.
 
 0.995
yiaM_4
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
 
 
 0.995
AMD01368.1
Hypothetical protein.
    
  0.913
AMD01367.1
DctM-like transporter.
    
  0.904
yiaM_1
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
 
  
 0.804
siaT_12
Sialic acid TRAP transporter permease protein SiaT.
  
 0.800
siaT_2
Sialic acid TRAP transporter permease protein SiaT.
  
 0.796
siaT_9
Sialic acid TRAP transporter permease protein SiaT.
  
 0.786
siaT_22
Sialic acid TRAP transporter permease protein SiaT.
  
 0.783
siaT_3
Sialic acid TRAP transporter permease protein SiaT.
  
 0.782
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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