STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiO_1Moderate conductance mechanosensitive channel YbiO precursor. (780 aa)    
Predicted Functional Partners:
AMD01463.1
Putative amidoligase enzyme.
 
     0.787
AMD01464.1
Putative glutamine amidotransferase.
       0.754
AMD01461.1
Hypothetical protein.
       0.628
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.557
AMD02155.1
Hypothetical protein; Phosphate-specific transport system accessory protein PhoU homolog.
  
     0.492
AMD01433.1
Hypothetical protein.
  
     0.490
AMD01889.1
Hypothetical protein.
  
     0.435
AMD01227.1
Hypothetical protein.
  
     0.432
AMD00271.1
acetoacetyl-CoA reductase.
 
     0.426
AMC99971.1
Hypothetical protein.
  
     0.423
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.