STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluERibosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. (202 aa)    
Predicted Functional Partners:
nudJ
Phosphatase NudJ; Belongs to the Nudix hydrolase family. NudJ subfamily.
  
  
 0.880
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.697
icd_2
Isocitrate dehydrogenase [NADP]; Belongs to the monomeric-type IDH family.
       0.690
cmk
Cytidylate kinase.
 
  
 0.646
ycfD
50S ribosomal protein L16 arginine hydroxylase.
 
    0.641
icd_1
Isocitrate dehydrogenase [NADP].
       0.625
xthA
Exodeoxyribonuclease III.
  
    0.563
exoA
Exodeoxyribonuclease.
  
    0.563
rluC
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
 
 0.551
AMC99696.1
Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.480
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.