Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMD01753.1 | mepS | LOKO_02700 | LOKO_02699 | Hypothetical protein. | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | 0.472 |
AMD01753.1 | ynfM | LOKO_02700 | LOKO_02697 | Hypothetical protein. | Inner membrane transport protein YnfM. | 0.508 |
amiC_1 | mepS | LOKO_00837 | LOKO_02699 | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | 0.478 |
amiC_1 | mltB_2 | LOKO_00837 | LOKO_02206 | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | Membrane-bound lytic murein transglycosylase B precursor. | 0.569 |
amiC_1 | pbpG | LOKO_00837 | LOKO_02472 | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | Penicillin-binding protein 2D; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.553 |
mepS | AMD01753.1 | LOKO_02699 | LOKO_02700 | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | Hypothetical protein. | 0.472 |
mepS | amiC_1 | LOKO_02699 | LOKO_00837 | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | 0.478 |
mepS | mltB_2 | LOKO_02699 | LOKO_02206 | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | Membrane-bound lytic murein transglycosylase B precursor. | 0.454 |
mepS | pbpG | LOKO_02699 | LOKO_02472 | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | Penicillin-binding protein 2D; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.523 |
mepS | ynfM | LOKO_02699 | LOKO_02697 | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | Inner membrane transport protein YnfM. | 0.576 |
mltB_2 | amiC_1 | LOKO_02206 | LOKO_00837 | Membrane-bound lytic murein transglycosylase B precursor. | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | 0.569 |
mltB_2 | mepS | LOKO_02206 | LOKO_02699 | Membrane-bound lytic murein transglycosylase B precursor. | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | 0.454 |
pbpG | amiC_1 | LOKO_02472 | LOKO_00837 | Penicillin-binding protein 2D; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | 0.553 |
pbpG | mepS | LOKO_02472 | LOKO_02699 | Penicillin-binding protein 2D; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | 0.523 |
ynfM | AMD01753.1 | LOKO_02697 | LOKO_02700 | Inner membrane transport protein YnfM. | Hypothetical protein. | 0.508 |
ynfM | mepS | LOKO_02697 | LOKO_02699 | Inner membrane transport protein YnfM. | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase precursor. | 0.576 |