Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMD01331.1 | AMD01812.1 | LOKO_02271 | LOKO_02760 | Blue-light-activated protein. | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | 0.681 |
AMD01331.1 | cheA | LOKO_02271 | LOKO_02769 | Blue-light-activated protein. | Chemotaxis protein CheA. | 0.779 |
AMD01331.1 | cheB | LOKO_02271 | LOKO_02763 | Blue-light-activated protein. | Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.749 |
AMD01331.1 | cheR | LOKO_02271 | LOKO_02764 | Blue-light-activated protein. | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.566 |
AMD01331.1 | cheR2_1 | LOKO_02271 | LOKO_00619 | Blue-light-activated protein. | Chemotaxis protein methyltransferase Cher2. | 0.900 |
AMD01331.1 | cheR2_2 | LOKO_02271 | LOKO_03091 | Blue-light-activated protein. | Chemotaxis protein methyltransferase Cher2. | 0.897 |
AMD01331.1 | cheW | LOKO_02271 | LOKO_02768 | Blue-light-activated protein. | Chemotaxis protein CheW. | 0.828 |
AMD01331.1 | cheY | LOKO_02271 | LOKO_02761 | Blue-light-activated protein. | Chemotaxis protein CheY. | 0.791 |
AMD01331.1 | cph2_8 | LOKO_02271 | LOKO_01443 | Blue-light-activated protein. | Phytochrome-like protein cph2. | 0.955 |
AMD01331.1 | tar_3 | LOKO_02271 | LOKO_02762 | Blue-light-activated protein. | Methyl-accepting chemotaxis protein II. | 0.599 |
AMD01812.1 | AMD01331.1 | LOKO_02760 | LOKO_02271 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Blue-light-activated protein. | 0.681 |
AMD01812.1 | cheA | LOKO_02760 | LOKO_02769 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Chemotaxis protein CheA. | 0.986 |
AMD01812.1 | cheB | LOKO_02760 | LOKO_02763 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.952 |
AMD01812.1 | cheR | LOKO_02760 | LOKO_02764 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.907 |
AMD01812.1 | cheR2_1 | LOKO_02760 | LOKO_00619 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Chemotaxis protein methyltransferase Cher2. | 0.944 |
AMD01812.1 | cheR2_2 | LOKO_02760 | LOKO_03091 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Chemotaxis protein methyltransferase Cher2. | 0.944 |
AMD01812.1 | cheW | LOKO_02760 | LOKO_02768 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Chemotaxis protein CheW. | 0.940 |
AMD01812.1 | cheY | LOKO_02760 | LOKO_02761 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Chemotaxis protein CheY. | 0.999 |
AMD01812.1 | cph2_8 | LOKO_02760 | LOKO_01443 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Phytochrome-like protein cph2. | 0.616 |
AMD01812.1 | tar_3 | LOKO_02760 | LOKO_02762 | Chemotaxis regulator CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Methyl-accepting chemotaxis protein II. | 0.744 |
page 1 of 6