STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfGCyclic di-GMP phosphodiesterase response regulator RpfG. (561 aa)    
Predicted Functional Partners:
AMD01827.1
Flagellar hook-length control protein FliK.
 
    0.863
AMD01828.1
Flagellar biosynthesis protein FliT.
 
     0.834
cph2_19
Phytochrome-like protein cph2.
 
   
 0.749
flhB_2
Flagellar biosynthetic protein FlhB.
 
     0.719
AMD02699.1
Flagellar protein FlaG.
 
  
 0.711
fliS
Flagellar protein FliS.
 
     0.706
yegE_1
Putative diguanylate cyclase YegE.
 
 
 0.587
yegE_3
Putative diguanylate cyclase YegE.
 
 
 0.586
cph2_17
Phytochrome-like protein cph2.
 
 
 0.585
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.583
Your Current Organism:
Halomonas chromatireducens
NCBI taxonomy Id: 507626
Other names: H. chromatireducens, Halomonas sp. AGD 8-3, strain AGD 8-3 c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.