Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMD01331.1 | barA_2 | LOKO_02271 | LOKO_02075 | Blue-light-activated protein. | Signal transduction histidine-protein kinase BarA. | 0.971 |
AMD01331.1 | cheA | LOKO_02271 | LOKO_02769 | Blue-light-activated protein. | Chemotaxis protein CheA. | 0.779 |
AMD01331.1 | cheR2_1 | LOKO_02271 | LOKO_00619 | Blue-light-activated protein. | Chemotaxis protein methyltransferase Cher2. | 0.900 |
AMD01331.1 | cheR2_2 | LOKO_02271 | LOKO_03091 | Blue-light-activated protein. | Chemotaxis protein methyltransferase Cher2. | 0.897 |
AMD01331.1 | glnL | LOKO_02271 | LOKO_00024 | Blue-light-activated protein. | Nitrogen regulation protein NR(II). | 0.584 |
AMD01331.1 | glrK_1 | LOKO_02271 | LOKO_00536 | Blue-light-activated protein. | Sensor histidine kinase GlrK. | 0.505 |
AMD01331.1 | glrK_2 | LOKO_02271 | LOKO_02855 | Blue-light-activated protein. | Sensor histidine kinase GlrK. | 0.572 |
AMD01331.1 | qseF | LOKO_02271 | LOKO_02853 | Blue-light-activated protein. | Transcriptional regulatory protein QseF. | 0.606 |
AMD01331.1 | rpoN | LOKO_02271 | LOKO_01151 | Blue-light-activated protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.511 |
AMD01905.1 | glrK_1 | LOKO_02854 | LOKO_00536 | Hypothetical protein. | Sensor histidine kinase GlrK. | 0.508 |
AMD01905.1 | glrK_2 | LOKO_02854 | LOKO_02855 | Hypothetical protein. | Sensor histidine kinase GlrK. | 0.773 |
AMD01905.1 | qseF | LOKO_02854 | LOKO_02853 | Hypothetical protein. | Transcriptional regulatory protein QseF. | 0.747 |
barA_2 | AMD01331.1 | LOKO_02075 | LOKO_02271 | Signal transduction histidine-protein kinase BarA. | Blue-light-activated protein. | 0.971 |
barA_2 | cheA | LOKO_02075 | LOKO_02769 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein CheA. | 0.863 |
barA_2 | cheR2_1 | LOKO_02075 | LOKO_00619 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein methyltransferase Cher2. | 0.879 |
barA_2 | cheR2_2 | LOKO_02075 | LOKO_03091 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein methyltransferase Cher2. | 0.879 |
barA_2 | glnL | LOKO_02075 | LOKO_00024 | Signal transduction histidine-protein kinase BarA. | Nitrogen regulation protein NR(II). | 0.683 |
barA_2 | glrK_1 | LOKO_02075 | LOKO_00536 | Signal transduction histidine-protein kinase BarA. | Sensor histidine kinase GlrK. | 0.866 |
barA_2 | glrK_2 | LOKO_02075 | LOKO_02855 | Signal transduction histidine-protein kinase BarA. | Sensor histidine kinase GlrK. | 0.946 |
barA_2 | qseF | LOKO_02075 | LOKO_02853 | Signal transduction histidine-protein kinase BarA. | Transcriptional regulatory protein QseF. | 0.605 |
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