Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMD01871.1 | AMD02073.1 | LOKO_02820 | LOKO_03025 | Long-chain-fatty-acid--AMP ligase FadD29. | Putative outer membrane protein precursor. | 0.545 |
AMD01871.1 | prfB | LOKO_02820 | LOKO_03024 | Long-chain-fatty-acid--AMP ligase FadD29. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.600 |
AMD02073.1 | AMD01871.1 | LOKO_03025 | LOKO_02820 | Putative outer membrane protein precursor. | Long-chain-fatty-acid--AMP ligase FadD29. | 0.545 |
AMD02073.1 | copA_3 | LOKO_03025 | LOKO_03027 | Putative outer membrane protein precursor. | Copper-exporting P-type ATPase A. | 0.702 |
AMD02073.1 | prfB | LOKO_03025 | LOKO_03024 | Putative outer membrane protein precursor. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.459 |
AMD02073.1 | zntR_2 | LOKO_03025 | LOKO_03026 | Putative outer membrane protein precursor. | HTH-type transcriptional regulator ZntR. | 0.702 |
copA_3 | AMD02073.1 | LOKO_03027 | LOKO_03025 | Copper-exporting P-type ATPase A. | Putative outer membrane protein precursor. | 0.702 |
copA_3 | zntR_2 | LOKO_03027 | LOKO_03026 | Copper-exporting P-type ATPase A. | HTH-type transcriptional regulator ZntR. | 0.887 |
prfB | AMD01871.1 | LOKO_03024 | LOKO_02820 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Long-chain-fatty-acid--AMP ligase FadD29. | 0.600 |
prfB | AMD02073.1 | LOKO_03024 | LOKO_03025 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Putative outer membrane protein precursor. | 0.459 |
zntR_2 | AMD02073.1 | LOKO_03026 | LOKO_03025 | HTH-type transcriptional regulator ZntR. | Putative outer membrane protein precursor. | 0.702 |
zntR_2 | copA_3 | LOKO_03026 | LOKO_03027 | HTH-type transcriptional regulator ZntR. | Copper-exporting P-type ATPase A. | 0.887 |