Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ascD | carA | LOKO_02883 | LOKO_03432 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.821 |
ascD | carB | LOKO_02883 | LOKO_03431 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.834 |
ascD | fre | LOKO_02883 | LOKO_02960 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | NAD(P)H-flavin reductase. | 0.931 |
ascD | iadA_2 | LOKO_02883 | LOKO_03028 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | Isoaspartyl dipeptidase. | 0.617 |
ascD | pucK | LOKO_02883 | LOKO_00337 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | Uric acid permease PucK. | 0.479 |
ascD | pyrB | LOKO_02883 | LOKO_00993 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | Aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | 0.829 |
ascD | pyrD | LOKO_02883 | LOKO_02663 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.957 |
ascD | pyrE_1 | LOKO_02883 | LOKO_00418 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | Orotate phosphoribosyltransferase. | 0.792 |
ascD | pyrE_2 | LOKO_02883 | LOKO_02267 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.792 |
ascD | pyrF | LOKO_02883 | LOKO_00914 | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.836 |
carA | ascD | LOKO_03432 | LOKO_02883 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase. | 0.821 |
carA | carB | LOKO_03432 | LOKO_03431 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.999 |
carA | fre | LOKO_03432 | LOKO_02960 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | NAD(P)H-flavin reductase. | 0.810 |
carA | iadA_2 | LOKO_03432 | LOKO_03028 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Isoaspartyl dipeptidase. | 0.734 |
carA | pucK | LOKO_03432 | LOKO_00337 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Uric acid permease PucK. | 0.706 |
carA | pyrB | LOKO_03432 | LOKO_00993 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | 0.999 |
carA | pyrD | LOKO_03432 | LOKO_02663 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.933 |
carA | pyrE_1 | LOKO_03432 | LOKO_00418 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Orotate phosphoribosyltransferase. | 0.812 |
carA | pyrE_2 | LOKO_03432 | LOKO_02267 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.812 |
carA | pyrF | LOKO_03432 | LOKO_00914 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.895 |
page 1 of 6