Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
acdA_1 | fadA_1 | LOKO_01430 | LOKO_02619 | Acyl-CoA dehydrogenase. | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.937 |
acdA_1 | fadA_2 | LOKO_01430 | LOKO_03082 | Acyl-CoA dehydrogenase. | 3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed. | 0.937 |
acdA_1 | fadB_4 | LOKO_01430 | LOKO_03081 | Acyl-CoA dehydrogenase. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.977 |
acdA_1 | fadE | LOKO_01430 | LOKO_03038 | Acyl-CoA dehydrogenase. | Acyl-coenzyme A dehydrogenase. | 0.900 |
acdA_1 | mmgC_4 | LOKO_01430 | LOKO_03637 | Acyl-CoA dehydrogenase. | Acyl-CoA dehydrogenase. | 0.922 |
bktB | fadA_1 | LOKO_03638 | LOKO_02619 | Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.920 |
bktB | fadA_2 | LOKO_03638 | LOKO_03082 | Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. | 3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed. | 0.917 |
bktB | fadB_4 | LOKO_03638 | LOKO_03081 | Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.997 |
bktB | fadE | LOKO_03638 | LOKO_03038 | Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. | Acyl-coenzyme A dehydrogenase. | 0.941 |
bktB | mmgC_4 | LOKO_03638 | LOKO_03637 | Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. | Acyl-CoA dehydrogenase. | 0.987 |
bktB | pcaF_2 | LOKO_03638 | LOKO_03382 | Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. | Beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.800 |
bktB | thlA_1 | LOKO_03638 | LOKO_02577 | Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. | Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.827 |
bktB | thlA_2 | LOKO_03638 | LOKO_03413 | Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. | Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.812 |
fabV | fadB_4 | LOKO_00278 | LOKO_03081 | Putative reductase; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.910 |
fabV | fadE | LOKO_00278 | LOKO_03038 | Putative reductase; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family. | Acyl-coenzyme A dehydrogenase. | 0.903 |
fabV | mmgC_4 | LOKO_00278 | LOKO_03637 | Putative reductase; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family. | Acyl-CoA dehydrogenase. | 0.903 |
fadA_1 | acdA_1 | LOKO_02619 | LOKO_01430 | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | Acyl-CoA dehydrogenase. | 0.937 |
fadA_1 | bktB | LOKO_02619 | LOKO_03638 | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. | 0.920 |
fadA_1 | fadA_2 | LOKO_02619 | LOKO_03082 | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed. | 0.917 |
fadA_1 | fadB_4 | LOKO_02619 | LOKO_03081 | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.996 |
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