STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGRI_038950Histone deacetylase superfamily. (642 aa)    
Predicted Functional Partners:
PGRI_056020
Histone-binding protein RBBP4.
   
 0.971
PGRI_064980
Chromo domain/shadow.
    
 0.969
PGRI_084410
FAS1 domain-containing protein.
   
 0.968
PGRI_084230
Histone deacetylase interacting.
   
 0.968
PGRI_053510
Uncharacterized protein.
    
 0.966
PGRI_095030
SANT domain-containing protein.
    
 0.958
PGRI_001690
Winged helix-turn-helix transcription repressor DNA-binding.
   
 0.950
PGRI_019140
PAPA-1-like conserved region.
    
 0.948
PGRI_001270
SNF2-related protein.
   
 0.946
PGRI_085940
Uncharacterized protein.
   
 0.940
Your Current Organism:
Penicillium griseofulvum
NCBI taxonomy Id: 5078
Other names: CBS 185.27, P. griseofulvum, Penicillium patulum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.