STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGRI_013470Transcription factor Tfb4. (372 aa)    
Predicted Functional Partners:
PGRI_000300
Uncharacterized protein.
    
 0.999
PGRI_008880
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.999
PGRI_055760
Xeroderma pigmentosum group B protein (XP-B).
    
 0.998
PGRI_044690
Helicase-like, DEXD box c2 type.
    
 0.998
PGRI_078910
Ssl1 domain-containing protein.
   
 0.998
PGRI_093860
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.997
PGRI_007340
Cdk-activating kinase assembly factor MAT1, centre.
    
 0.997
PGRI_002220
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.994
PGRI_077830
Transcription factor TFIIE, alpha subunit.
   
 0.994
PGRI_037010
Transcription factor TFIIB.
    
 0.976
Your Current Organism:
Penicillium griseofulvum
NCBI taxonomy Id: 5078
Other names: CBS 185.27, P. griseofulvum, Penicillium patulum
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